all of the suggestion that is from S/W coordinator are adopted.

1. modify doc/software-manual.tex

2. replace 2D array [64][64] for this MR with vector

3. fix Bug in bitstreamExtractorApp regarding removing APS.

- Add brace after conditions or loop in order to enclose single line.

implement JVET-S0219,
in order to implement extraction process that is decided to adopt by JVET_S0219, the equation (32) in the SPEC(JVET-S2001_vG) is needed to integrate. for this, JVET-R0193 and JVET-S0141 item47 is also implemented here.
please refer below meeting note for each aspect.
[JVET-S0219] Enable removal of parameter sets (i.e., PPS and APS) in non-output layer that is not used as reference for decoding of pictures in output layers during extraction process

AHG Recommendation (cleanup): Adopt APS aspect only.

[JVET-R0193] Signal max_tid_il_ref_pics_plus1 value separately for each direct reference layer of a layer, i.e. max_tid_il_ref_pics_plus1[ i ][ j ] for each direct reference layer j less than i, instead of single  max_tid_il_ref_pics_plus1[ i ]

AHG Recommendation (cleanup): Adopt. Text was provided in the contribution, and the authors are to supply the software

[JVET-S0141 item 47] In the general sub-bitstream extraction process, specify the conditions under which an output sub-bitstream is required to be a conforming bitstream such that the value of tIdTarget is specified to be in the range of 0 to vps_ptl_max_tid[ vps_ols_ptl_idx[ targetOlsIdx ] ], inclusive (instead of 0 to 6 inclusive)? (JVET-S0158 aspect 1)

Editor action item: The editor is suggested to include this change.

JVET-S0115 aspect 2 (JVET-S0142 item 4): Change the name and semantics of vps_all_layers_same_num_sublayers_flag (to be vps_default_ptl_dpb_hrd_max_tid_flag) to only control VPS syntax without requiring the number of sublayers to be the same for all layers.

Aspect 1: Remove the extra_sh_bits_struct( ) and extra_ph_bits_struct( ) structures and put their content directly in the SPS.

Aspect 6: Modify the derivation process for the variable TotalNumOlss by removing unnecessary text.

Also renamed 'numReorderPics' variables to 'maxNumReorderPics'

Move ILRPs before unusable reference pictures in RPL
Modify RPL verification to correctly handle ILRPs

1. bp_cpt_cnt_minus1 in BPSEI not being parsed.
2. Number of signalled pt_du_common_cpb_removal_delay[i] and pt_du_cpb_removal_delay_increment_minus1[i][j] not being signalled correctly.
3. Inference rule for pt_sublayer_delays_present_flag[i] when bp_max_sublayers_minus1 is 0
4. Initialization of m_nuhLayerId = 0 in initSlice

JVET-R0251 aspect 1: Renaming sps_XXX_pic_present_flag to sps_XXX_control_present_in_ph_flag for bdof, dmvr and prof.