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Fix #1595: Set ptl_multi_layer_enabled_flag when more than one layer is encoded

This solution sets ptl_multi_layer_enabled_flag automatically, when more than one layer is encoded.

This reduces the usefulness of the MultiLayerEnabledFlag command line parameter to the case, where enabling the flag for a single layer is wanted.

An alternative solution would be to fail instead of a warning and ask the user to manually enable MultiLayerEnabledFlag.

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